Repositories list

• isa-api

  Public
  ISA tools API

  pythonisalife-sciences-image+ 2

  pythonisalife-sciences-imagedata-managementexperimental-metadata

  Python

  •

  Other

  •4343 forks•4747 stars•4242 issues•22 pull requests•Updated Mar 30, 2026Mar 30, 2026

• mzml2isa

  Public
  Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

  Python

  •

  GNU General Public License v3.0

  •66 forks•1212 stars•1212 issues•22 pull requests•Updated Mar 27, 2026Mar 27, 2026

• ISAdatasets

  Public
  Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)

  datasetsisa-datasetsisa-json+ 1

  datasetsisa-datasetsisa-jsonisa-tab

  1111 forks•77 stars•22 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• MSIO

  Public
  Metabolomics Standards Initiative Ontology

  data-sciencemetabolomicsmass-spectrometry+ 3

  data-sciencemetabolomicsmass-spectrometrydata-sharingnmr-spectroscopyfluxomics

  Java

  •33 forks•77 stars•11 issue•22 pull requests•Updated Oct 19, 2025Oct 19, 2025

• ptox-metadata-manager-client

  Public
  PrecisionTox Metadata Manager Client (funded by H2020-EU 965406 grant)

  Vue

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•00 stars•22 issues•22 pull requests•Updated Jun 27, 2025Jun 27, 2025

• isa-rwval

  Public
  Read/write/validation packages for the ISA tools API

  Python

  •

  Other

  •55 forks•11 star•22 issues•00 pull requests•Updated Jun 18, 2025Jun 18, 2025

• stato

  Public
  This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website…

  statisticsowlontology+ 1

  statisticsowlontologyobofoundry

  Java

  •88 forks•3737 stars•00 issues•00 pull requests•Updated Feb 23, 2025Feb 23, 2025

• stato-dashboard

  Public
  a obofoundry template based dashboard

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2024Jul 18, 2024

• graph2tab

  Public
  graph2tab, a library to convert experimental workflow graphs into tabular formats

  Java

  •11 fork•66 stars•00 issues•00 pull requests•Updated Apr 30, 2024Apr 30, 2024

• OntoMaton

  Public
  OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

  google-spreadsheetontologyols+ 4

  google-spreadsheetontologyolsontology-searchontology-lookup-servicesbioportallov

  JavaScript

  •88 forks•4242 stars•1111 issues•66 pull requests•Updated Jan 8, 2024Jan 8, 2024

• nmrml2isa

  Public
  Generate ISA-Tab studies from .nmrML files

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Nov 6, 2023Nov 6, 2023

• ISAvalidator-ISAconverter-BIImanager

  Public
  The ISAvalidator, ISA converter and BII data manager tools

  Java

  •1616 forks•1212 stars•1919 issues•22 pull requests•Updated Jul 7, 2023Jul 7, 2023

• ISAcreator

  Public
  ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contri…

  javadata-managementexperimental-metadata+ 2

  javadata-managementexperimental-metadataisa-tab-datasetisacreator

  Java

  •

  Other

  •2727 forks•4040 stars•4949 issues•22 pull requests•Updated Mar 23, 2023Mar 23, 2023

• isa-specs

  Public
  ISA Model and Serialization Specifications

  HTML

  •66 forks•66 stars•22 issues•44 pull requests•Updated Feb 28, 2023Feb 28, 2023

• isa-contexts

  Public
  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 23, 2023Feb 23, 2023

• ISA-tools.github.io

  Public
  ISA tools website

  HTML

  •00 forks•00 stars•22 issues•11 pull request•Updated Feb 15, 2023Feb 15, 2023

• isatools-notebooks

  Public
  Example Jupyter notebooks using the ISA-API

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•55 stars•44 issues•55 pull requests•Updated Feb 10, 2023Feb 10, 2023

• isa-configurations

  Public
  ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management T…

  1010 forks•66 stars•55 issues•00 pull requests•Updated Jan 6, 2023Jan 6, 2023

• mzml2isa-galaxy

  Public
  mzml2isa for galaxy

  55 forks•66 stars•00 issues•00 pull requests•Updated Dec 7, 2022Dec 7, 2022

• BioSharingUtils

  Public
  A selection of tools to automatically update content in BioSharing.

  Java

  •00 forks•11 star•00 issues•11 pull request•Updated Jun 21, 2022Jun 21, 2022

• psql2graphql

  Public
  A PSQL to GRAPHQL python API using flask

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•11 pull request•Updated May 12, 2022May 12, 2022

• BioInvIndex

  Public
  The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (…

  Java

  •1414 forks•1616 stars•1212 issues•00 pull requests•Updated Feb 28, 2022Feb 28, 2022

• ISAconfigurator

  Public
  The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and IS…

  Java

  •1212 forks•1313 stars•33 issues•00 pull requests•Updated Feb 28, 2022Feb 28, 2022

• stato-app

  Public
  The web application for the STATO ontology

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2022Feb 14, 2022

• isa-create-test-notebooks

  Public
  A set of notebooks to create StudyDesigns

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 24, 2021Aug 24, 2021

• isaLD

  Public
  A netlify endpoint to inject ISA LD into ISA JSON

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 23, 2021Jun 23, 2021

• jUtils

  Public
  jUtils, a miscellanea of small and handy general purpose utilities for Java

  Java

  •77 forks•66 stars•00 issues•55 pull requests•Updated Jun 7, 2021Jun 7, 2021

• ISAcommons.github.io

  Public
  ISA commons website

  JavaScript

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2021Apr 25, 2021

• isa-rest-service

  Public
  RESTful web service to use ISA API

  Python

  •

  Other

  •22 forks•33 stars•1010 issues•11 pull request•Updated Feb 16, 2021Feb 16, 2021

• isa-cookbook

  Public
  ISA python API documentation

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •11 fork•11 star•00 issues•00 pull requests•Updated Jan 30, 2021Jan 30, 2021